Aplikasi Basic Local Alignment Search Tool (BLAST) NCBI Pada Penelitian Molekuler Salmonella SPP
Keywords:
NCBI, BLAST, Salmonella, BLASTn, BLASTp, PrimerBLAST
Abstract
Basic Local Alignment Search Tool (BLAST) merupakan tool pada website NCBI yang banyak digunakan pada penelitian mikrobiologi molekuler. Tujuan penelitian ini adalah melakukan review sistematik dari fungsi program BLAST dan menentukan parameter penting yang diaplikasikan pada penelitian Salmonella asal produk pangan. Salmonella spp. menjadi fokus karena bakteri ini terdiri dari banyak serovar yang memiliki variasi dalam mekanisme virulensi, perbedaan patogenitas dan adaptasi Salmonella terhadap inangnya. Pencarian artikel dilakukan dengan menggunakan mesin pencari PUBMED dan Google Scholar, dengan penentuan kriteria artikel dengan menggunakan metode PICO (problem/population, intervention, comparation, outcome), dan penyeleksian artikel dengan menggunakan metode PRISMA. Hasil penelitian terseleksi 30 artikel yang masuk dalam kriteria. Fungsi BLAST diaplikasikan pada 4 fungsi yaitu: (1) mengidentifikasi sekuens, (2) menemukan DNA target dengan efisien, (3) menyimpulkan fungsi gen dan menduga domain architecture dari struktur proteinnya, serta (4) merancang primer. BLAST NCBI yang digunakan adalah BLASTn, BLASTp serta PRIMER BLAST. Aplikasi tersebut dapat digunakan dengan memperhatikan parameter penting pada empat fungsi tersebut
Downloads
Download data is not yet available.
References
Achyar, A, Atifah, Y dan Putri D. 2021. In silico Study of Developing a Method for Detecting Pathogenic Bacteria in Refillable Drinking Water Samples. Journal of Physics: Conference Series, 1940(1), p.012061.
Akinola SA, Mwanza M dan Collin NA. 2019. Occurrence, Genetic Diversities And Antibiotic Resistance Profiles Of Salmonella Serovars Isolated From Chickens.Dovepress Infection and Drug Resistance 2019:12 3327–3342
Alarjani K, Elkhadragy M, Al-Masoud A, Yehia H. 2021. Detection of Campylobacter jejuni and Salmonella typhimurium in chicken using PCR for virulence factor hipO and invA genes (Saudi Arabia). Bioscience Reports, 41(9).
Ãlvarez-Fernández, Rubén (2013). [Methods in Enzymology] Laboratory Methods in Enzymology: DNA Volume 529 || Explanatory Chapter. , (), 1–21. doi:10.1016/B978-0-12-418687-3.00001-X
Arunima A, Swain SK, Patra SD, Das S, Mohakud NK, Misra N, Suar M. 2021. Role of OB-fold protein YdeI in stress response and virulence of Salmonella enterica serovar Enteritidis. J Bacteriol 203:e00237-20. https:// doi.org/10.1128/JB.00237-20
Bano S, Hayat M, Samreen T, Asif M, Habiba U, Uzair B. 2020. Detection of Pathogenic Bacteria Staphylococcus aureus and Salmonella sp. from Raw Milk Samples of Different Cities of Pakistan. Natural Science, 12, 295-306. doi: 10.4236/ns.2020.125026.
Bejerano G, Seldin Y, Margalit H, Tishby N. 2001. Extraction of Protein Domains and Signatures through Unsupervised Statistical Sequence Segmentation.
Bell,RL, Jarvis KG, Ottesen AR, Melinda AM dan Eric WB. Recent and emerging innovations in Salmonella detection: a food and environmental perspective. Microbial Biotechnology 9(3), 279–292 doi:10.1111/1751-7915.12359
Boratyn, MG, Camacho C, Cooper PS, George C, Amelia F, Ning M, Thomas LM, Wayne T. M, Scott D. M, Yuri M, Yan R, Eric WS, Tao T, Jian Y and Irena Z.2013. BLAST: a more efficient report with usability improvements. Nucleic Acids Research, 2013, Vol. 41, Web Server issue W29–W33 doi:10.1093/nar/gkt282
Bustin, S dan Huggett J. 2017. qPCR primer design revisited. Biomolecular Detection and Quantification, 14, pp.19-28.
Cha, M, Woo G, Lee W. Kim, S, Woo, J, Kim, J, Ryu, J, Kwak, H. and Chi, Y, 2020. Emergence of Transferable mcr-9 Gene-Carrying Colistin-Resistant Salmonella enterica Dessau ST14 Isolated from Retail Chicken Meat in Korea. Foodborne Pathogens and Disease, 17(11), pp.720-727.
Chen Z, Zhong H, Luo H, Zhang R, Huang J. 2018. Recombinase Polymerase Amplification Combined with Unmodified Gold Nanoparticles for Salmonella Detection in Milk. Food Analytical Methods, 12(1), pp.190-197.
Cheng R, Eade C, Wiedmann M. 2019. Embracing Diversity: Differences in Virulence Mechanisms, Disease Severity, and Host Adaptations Contribute to the Success of Nontyphoidal Salmonella as a Foodborne Pathogen. Frontiers in Microbiology, 10.
Choudhury, M., Borah, P., Sarma, H., Barkalita, L., Deka, N., Hussain, I. and Iftikar Hussain, M., 2016. Multiplex-PCR Assay for Detection of some Major Virulence Genes of <i>Salmonella enterica</i> Serovars from Diverse Sources. Current Science, 111(7), p.1252.
Elabed, H., Merghni, A., Hamza, R., Bakhrouf, A. and Gaddour, K., 2016. Molecular analysis of the adaptive response in Salmonella Typhimurium after starvation in salty conditions. The Journal of Infection in Developing Countries, 10(01), pp.74-81.
Forslund K, Pekkari I, Sonnhammer E. 2011. Domain architecture conservation in orthologs. BMC Bioinformatics 2011, 12:326
Gao W, Huang H, Zhu P,• Yan X, Jianzhong F, inpo J, Jilin X. 2018. Recombinase polymerase amplification combined with lateral flow dipstick for equipment-free detection of Salmonella in shellfish. Bioprocess and Biosystems Engineering https://doi.org/10.1007/s00449-018-1895-2
Gast RK dan Porter, Jr R. 2020. Salmonella Infections. Diseases of Poultry, Fourteenth Edition.
Gong J, Zhuang L, Zhu C, Shi S, Zhang, D, Zhang L, Yu Y, Dou X, Xu B dan Wang C. 2016. Loop-Mediated Isothermal Amplification of the sefA Gene for Rapid Detection of Salmonella Enteritidis and Salmonella Gallinarum in Chickens. Foodborne Pathogens and Disease, 13(4), pp.177-181.
Hennebery SC, Sait LC, Mantena R, Humphrey TJ, Yang J, et al. (2012) Salmonella Typhimurium’s Transthyretin-Like Protein Is a Host-Specific Factor Important in Fecal Survival in Chickens. PLoS ONE 7(12): e46675. doi:10.1371/journal.pone.0046675
Hung J dan Weng Z. 2016. Designing Polymerase Chain Reaction Primers Using Primer3Plus. Cold Spring Harbor Protocols, 2016(9), p.pdb.prot093096.
Issenhuth-Jeanjean S, Roggentin P, Mikoleit M, Guibourdenche M, de Pinna E, Nair S, Fields PI, Weill F-X. 2014. Supplement 2008 –2010 (no. 48) to the White–Kauffmann–Le Minor scheme. Res Microbiol 165: 526 –530.
Kumar, A. and Chordia, N., 2015. In Silico PCR Primer Designing and Validation. Methods in Molecular Biology, pp.143-151.
Ladunga I. 2017. Finding similar nucleotide sequences using network BLAST searches. Current Protocols in Bioinformatics, 58, 3.3.1–3.3.25. doi: 10.1002/cpbi.29
Li, B. and Chen, J., 2013. Development of a sensitive and specific qPCR assay in conjunction with propidium monoazide for enhanced detection of live Salmonella spp. in food. BMC Microbiology, 13(1), p.273.
Li, R., Lai, J., Wang, Y., Liu, S., Li, Y., Liu, K., Shen, J. and Wu, C., 2013. Prevalence and characterization of Salmonella species isolated from pigs, ducks and chickens in Sichuan Province, China. International Journal of Food Microbiology, 163(1), pp.14-18.
Madden T. 2013. The BLAST Sequence Analysis Tool. The NCBI Handbook Chapter 16. The nacional Library of Medicine.
Mahram A, Herbordt MC. 2015. NCBI BLASTP on High-Performance Reconfigurable Computing Systems. ACM Transactions on Reconfigurable Technology and Systems, 7(4), 1–20. doi:10.1145/2629691
Melati RP, Nurjanah S dan Rahayu, WP. 2022. Desain Primer Gen Virulensi invA untuk Identifikasi dan Sekuensing Salmonella pada Sampel Karkas Ayam. Jurnal Ilmu Produksi dan Teknologi Hasil Peternakan, 10(2), pp.91-97.
Mkangara M, Mbega ER, Chacha M. 2020. Molecular identification of Salmonella Typhimurium from village chickens based on invA and spvC genes, Veterinary World, 13(4): 764-767.
Muhsinin S, Sulastri M. and Supriadi D. 2019. Deteksi Cepat Gen InvA pada Salmonella spp. Dengan Metode PCR. Jurnal Sains Farmasi & Klinis 5(3) p.191.
Nurjanah, S, Rahayu WP, Al Mutaqin L. 2019. Detection Method for Salmonella Typhimurium and Salmonella Enteritidis using Real-Time Polymerase Chain Reaction. International Journal of Engineering & Technology, 7(4.14), p.302..
Pal S, Dey S, Batabyal K, Banerjee A, Joardar SN, Samanta I, Isore DP. 2017. Characterization of Salmonella Gallinarum isolates from backyard poultry by polymerase chain reaction detection of invasion (invA) and Salmonella plasmid virulence (spvC) genes, Veterinary World, 10(7): 814-81
Pearson W. 2013. An Introduction to Sequence Similarity (“Homologyâ€) Searching. Current Protocols in Bioinformatics, 42(1).
Pollock A dan Berge E. 2018. How To Do a Systematic Review. International Journal of Stroke 2018, Vol. 13(2) 138–156 DOI: 10.1177/1747493017743796
Rehman MA, Yin X, PersaudLachhman MG, Diarra MS. 2017. First detection of a fosfomycin resistance gene, fosA7, in Salmonella enterica serovar Heidelberg isolated from broiler chickens. Antimicrob Agents Chemother 61:e00410-17. https://doi.org/10 .1128/AAC.00410-17.
Rinanda, T. 2011. Analisis Sekuensing 16S rRNA Di Bidang Mikrobiologi. Jks, 3, 172–177.
Rosniawati T, Rahayu WP, Kusumaningrum HD. 2020. Prevalence and level of Salmonella spp. Contamination on selected pathways of preparation and cooking of fried chicken at the household level. Food Science and Technology DOI: https://doi.org/10.1590/fst.10120
Sahu, B, Singh S, Behera B., Panda S., Das A, Parida, P. 2019. Rapid detection of Salmonella contamination in seafoods using multiplex PCR. Brazilian Journal of Microbiology, 50(3), pp.807-816.
Sallam, K, Mohammed, M, Hassan, M. and Tamura, T, 2014. Prevalence, molecular identification and antimicrobial resistance profile of Salmonella serovars isolated from retail beef products in Mansoura, Egypt. Food Control, 38, pp.209-214.
Samantha I, Jordan SN, Das PK, Sar TK, Bandyopadhyay S, Dutta TK, Sarkar U. 2014. Prevalence and antibiotic resistance profiles of Salmonella serotypes isolated from backyard poultry flocks in West Bengal, India. Poultry Science Association, Inc
Sarjit A, Ravensdale J, Coorey R, Fegan N. Dykes G. 2020. Survival of Salmonella on Red Meat in Response to Dry Heat. Journal of Food Protection, 84(3), pp.372-380.
Selçuk AA. 2019 A Guide for Systematic Reviews: PRISMA. Turk Arch
Sheridan RP dan Venkataraghavan R. 1992. A systematic Search For Protein Signature Sequences. Proteins: Structure, Function, and Genetics 14:16-28
Stove N dan Cavalcanti A. 2014. Using NCBI BLAST. Current Protocols Essential Laboratory Techniques, 8(1).
Stover N dan Cavalcanti A. 2017. Using NCBI BLAST Curr. Protoc. Essential Lab. Tech. 14:11.1.1-11.1.34. doi: 10.1002/cpet.8
Su JH, Zhu YH, Ren TY, Guo L, Yang GY, Jiao LG, Wang JF. Distribution and Antimicrobial Resistance of Salmonella Isolated from Pigs with Diarrhea in China. Microorganisms. 2018; 6(4):117. https://doi.org/10.3390/microorganisms6040117
Farida M dan Agustini D. 2019. Sistem Informasi Data Akademik Sekolah Pada MTS. Al Furqon Banjarmasin. Technologia Vol 10, No.2
Tomar RS, Jyoti A, Mishra RK, Vikas S, Shuchi K. 2014. In-silico Designing of SYBR Green Based Real-Time PCR Array for the Quantification of Salmonellae and Enterotoxigenic Escherichia coli in Water. European Academic Research Vol. I, Issue 12
Uddin M.B, Hossain SMB, Hasan M, Alam MN, Debnath M, Begum R, Roy S, Harun-Al-Rashid A, Chowdhury MSR, Rahman MM.. Multidrug Antimicrobial Resistance and Molecular Detection of mcr-1 Gene in Salmonella Species Isolated from Chicken. Animals 2021, 11, 206. https://doi.org/10.3390/ani11010206
Wahyuni FD, Saraswati H, Dewi KS. 2020. In Silico Analysis For cryl Gene Amplification From Bacillus thuringiensis. Bioedukasi: Jurnal Biologi dan Pembelajarannya. 18(1)8-14.
Ye, J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden T. 2012. Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics, 13(1).
Yu L, Tanwar DK, Penha EDS, Wolf YI, Koonin EV, Basu MK. 2019. Grammar of protein domain architechtures. Proceedings of the National Academy of Sciences DOI: 10.1073/pnas.181468411
Zelpina E dan Noor S. 2022. Non-Thypoid Salmonella Causes Food-borne Diseases Causing:Prevention and Control.
Zhai L, Liu H, Chen Q, Lu Z, Zhang C, Lv F, Bie X. 2018. Development of a real-time nucleic acid sequence–based amplification assay for the rapid detection of Salmonella spp. from food. Brazilian Journal of Microbiology, 50(1), pp.255-261.
Zhai, L, Yu, Q, Bie, X, Lu, Z, Lv, F, Zhang, C, Kong, X, Zhao, H, 2014. Development of a PCR test system for specific detection of Salmonella Paratyphi B in foods. FEMS Microbiology Letters, 355(1), pp.83-89.
Akinola SA, Mwanza M dan Collin NA. 2019. Occurrence, Genetic Diversities And Antibiotic Resistance Profiles Of Salmonella Serovars Isolated From Chickens.Dovepress Infection and Drug Resistance 2019:12 3327–3342
Alarjani K, Elkhadragy M, Al-Masoud A, Yehia H. 2021. Detection of Campylobacter jejuni and Salmonella typhimurium in chicken using PCR for virulence factor hipO and invA genes (Saudi Arabia). Bioscience Reports, 41(9).
Ãlvarez-Fernández, Rubén (2013). [Methods in Enzymology] Laboratory Methods in Enzymology: DNA Volume 529 || Explanatory Chapter. , (), 1–21. doi:10.1016/B978-0-12-418687-3.00001-X
Arunima A, Swain SK, Patra SD, Das S, Mohakud NK, Misra N, Suar M. 2021. Role of OB-fold protein YdeI in stress response and virulence of Salmonella enterica serovar Enteritidis. J Bacteriol 203:e00237-20. https:// doi.org/10.1128/JB.00237-20
Bano S, Hayat M, Samreen T, Asif M, Habiba U, Uzair B. 2020. Detection of Pathogenic Bacteria Staphylococcus aureus and Salmonella sp. from Raw Milk Samples of Different Cities of Pakistan. Natural Science, 12, 295-306. doi: 10.4236/ns.2020.125026.
Bejerano G, Seldin Y, Margalit H, Tishby N. 2001. Extraction of Protein Domains and Signatures through Unsupervised Statistical Sequence Segmentation.
Bell,RL, Jarvis KG, Ottesen AR, Melinda AM dan Eric WB. Recent and emerging innovations in Salmonella detection: a food and environmental perspective. Microbial Biotechnology 9(3), 279–292 doi:10.1111/1751-7915.12359
Boratyn, MG, Camacho C, Cooper PS, George C, Amelia F, Ning M, Thomas LM, Wayne T. M, Scott D. M, Yuri M, Yan R, Eric WS, Tao T, Jian Y and Irena Z.2013. BLAST: a more efficient report with usability improvements. Nucleic Acids Research, 2013, Vol. 41, Web Server issue W29–W33 doi:10.1093/nar/gkt282
Bustin, S dan Huggett J. 2017. qPCR primer design revisited. Biomolecular Detection and Quantification, 14, pp.19-28.
Cha, M, Woo G, Lee W. Kim, S, Woo, J, Kim, J, Ryu, J, Kwak, H. and Chi, Y, 2020. Emergence of Transferable mcr-9 Gene-Carrying Colistin-Resistant Salmonella enterica Dessau ST14 Isolated from Retail Chicken Meat in Korea. Foodborne Pathogens and Disease, 17(11), pp.720-727.
Chen Z, Zhong H, Luo H, Zhang R, Huang J. 2018. Recombinase Polymerase Amplification Combined with Unmodified Gold Nanoparticles for Salmonella Detection in Milk. Food Analytical Methods, 12(1), pp.190-197.
Cheng R, Eade C, Wiedmann M. 2019. Embracing Diversity: Differences in Virulence Mechanisms, Disease Severity, and Host Adaptations Contribute to the Success of Nontyphoidal Salmonella as a Foodborne Pathogen. Frontiers in Microbiology, 10.
Choudhury, M., Borah, P., Sarma, H., Barkalita, L., Deka, N., Hussain, I. and Iftikar Hussain, M., 2016. Multiplex-PCR Assay for Detection of some Major Virulence Genes of <i>Salmonella enterica</i> Serovars from Diverse Sources. Current Science, 111(7), p.1252.
Elabed, H., Merghni, A., Hamza, R., Bakhrouf, A. and Gaddour, K., 2016. Molecular analysis of the adaptive response in Salmonella Typhimurium after starvation in salty conditions. The Journal of Infection in Developing Countries, 10(01), pp.74-81.
Forslund K, Pekkari I, Sonnhammer E. 2011. Domain architecture conservation in orthologs. BMC Bioinformatics 2011, 12:326
Gao W, Huang H, Zhu P,• Yan X, Jianzhong F, inpo J, Jilin X. 2018. Recombinase polymerase amplification combined with lateral flow dipstick for equipment-free detection of Salmonella in shellfish. Bioprocess and Biosystems Engineering https://doi.org/10.1007/s00449-018-1895-2
Gast RK dan Porter, Jr R. 2020. Salmonella Infections. Diseases of Poultry, Fourteenth Edition.
Gong J, Zhuang L, Zhu C, Shi S, Zhang, D, Zhang L, Yu Y, Dou X, Xu B dan Wang C. 2016. Loop-Mediated Isothermal Amplification of the sefA Gene for Rapid Detection of Salmonella Enteritidis and Salmonella Gallinarum in Chickens. Foodborne Pathogens and Disease, 13(4), pp.177-181.
Hennebery SC, Sait LC, Mantena R, Humphrey TJ, Yang J, et al. (2012) Salmonella Typhimurium’s Transthyretin-Like Protein Is a Host-Specific Factor Important in Fecal Survival in Chickens. PLoS ONE 7(12): e46675. doi:10.1371/journal.pone.0046675
Hung J dan Weng Z. 2016. Designing Polymerase Chain Reaction Primers Using Primer3Plus. Cold Spring Harbor Protocols, 2016(9), p.pdb.prot093096.
Issenhuth-Jeanjean S, Roggentin P, Mikoleit M, Guibourdenche M, de Pinna E, Nair S, Fields PI, Weill F-X. 2014. Supplement 2008 –2010 (no. 48) to the White–Kauffmann–Le Minor scheme. Res Microbiol 165: 526 –530.
Kumar, A. and Chordia, N., 2015. In Silico PCR Primer Designing and Validation. Methods in Molecular Biology, pp.143-151.
Ladunga I. 2017. Finding similar nucleotide sequences using network BLAST searches. Current Protocols in Bioinformatics, 58, 3.3.1–3.3.25. doi: 10.1002/cpbi.29
Li, B. and Chen, J., 2013. Development of a sensitive and specific qPCR assay in conjunction with propidium monoazide for enhanced detection of live Salmonella spp. in food. BMC Microbiology, 13(1), p.273.
Li, R., Lai, J., Wang, Y., Liu, S., Li, Y., Liu, K., Shen, J. and Wu, C., 2013. Prevalence and characterization of Salmonella species isolated from pigs, ducks and chickens in Sichuan Province, China. International Journal of Food Microbiology, 163(1), pp.14-18.
Madden T. 2013. The BLAST Sequence Analysis Tool. The NCBI Handbook Chapter 16. The nacional Library of Medicine.
Mahram A, Herbordt MC. 2015. NCBI BLASTP on High-Performance Reconfigurable Computing Systems. ACM Transactions on Reconfigurable Technology and Systems, 7(4), 1–20. doi:10.1145/2629691
Melati RP, Nurjanah S dan Rahayu, WP. 2022. Desain Primer Gen Virulensi invA untuk Identifikasi dan Sekuensing Salmonella pada Sampel Karkas Ayam. Jurnal Ilmu Produksi dan Teknologi Hasil Peternakan, 10(2), pp.91-97.
Mkangara M, Mbega ER, Chacha M. 2020. Molecular identification of Salmonella Typhimurium from village chickens based on invA and spvC genes, Veterinary World, 13(4): 764-767.
Muhsinin S, Sulastri M. and Supriadi D. 2019. Deteksi Cepat Gen InvA pada Salmonella spp. Dengan Metode PCR. Jurnal Sains Farmasi & Klinis 5(3) p.191.
Nurjanah, S, Rahayu WP, Al Mutaqin L. 2019. Detection Method for Salmonella Typhimurium and Salmonella Enteritidis using Real-Time Polymerase Chain Reaction. International Journal of Engineering & Technology, 7(4.14), p.302..
Pal S, Dey S, Batabyal K, Banerjee A, Joardar SN, Samanta I, Isore DP. 2017. Characterization of Salmonella Gallinarum isolates from backyard poultry by polymerase chain reaction detection of invasion (invA) and Salmonella plasmid virulence (spvC) genes, Veterinary World, 10(7): 814-81
Pearson W. 2013. An Introduction to Sequence Similarity (“Homologyâ€) Searching. Current Protocols in Bioinformatics, 42(1).
Pollock A dan Berge E. 2018. How To Do a Systematic Review. International Journal of Stroke 2018, Vol. 13(2) 138–156 DOI: 10.1177/1747493017743796
Rehman MA, Yin X, PersaudLachhman MG, Diarra MS. 2017. First detection of a fosfomycin resistance gene, fosA7, in Salmonella enterica serovar Heidelberg isolated from broiler chickens. Antimicrob Agents Chemother 61:e00410-17. https://doi.org/10 .1128/AAC.00410-17.
Rinanda, T. 2011. Analisis Sekuensing 16S rRNA Di Bidang Mikrobiologi. Jks, 3, 172–177.
Rosniawati T, Rahayu WP, Kusumaningrum HD. 2020. Prevalence and level of Salmonella spp. Contamination on selected pathways of preparation and cooking of fried chicken at the household level. Food Science and Technology DOI: https://doi.org/10.1590/fst.10120
Sahu, B, Singh S, Behera B., Panda S., Das A, Parida, P. 2019. Rapid detection of Salmonella contamination in seafoods using multiplex PCR. Brazilian Journal of Microbiology, 50(3), pp.807-816.
Sallam, K, Mohammed, M, Hassan, M. and Tamura, T, 2014. Prevalence, molecular identification and antimicrobial resistance profile of Salmonella serovars isolated from retail beef products in Mansoura, Egypt. Food Control, 38, pp.209-214.
Samantha I, Jordan SN, Das PK, Sar TK, Bandyopadhyay S, Dutta TK, Sarkar U. 2014. Prevalence and antibiotic resistance profiles of Salmonella serotypes isolated from backyard poultry flocks in West Bengal, India. Poultry Science Association, Inc
Sarjit A, Ravensdale J, Coorey R, Fegan N. Dykes G. 2020. Survival of Salmonella on Red Meat in Response to Dry Heat. Journal of Food Protection, 84(3), pp.372-380.
Selçuk AA. 2019 A Guide for Systematic Reviews: PRISMA. Turk Arch
Sheridan RP dan Venkataraghavan R. 1992. A systematic Search For Protein Signature Sequences. Proteins: Structure, Function, and Genetics 14:16-28
Stove N dan Cavalcanti A. 2014. Using NCBI BLAST. Current Protocols Essential Laboratory Techniques, 8(1).
Stover N dan Cavalcanti A. 2017. Using NCBI BLAST Curr. Protoc. Essential Lab. Tech. 14:11.1.1-11.1.34. doi: 10.1002/cpet.8
Su JH, Zhu YH, Ren TY, Guo L, Yang GY, Jiao LG, Wang JF. Distribution and Antimicrobial Resistance of Salmonella Isolated from Pigs with Diarrhea in China. Microorganisms. 2018; 6(4):117. https://doi.org/10.3390/microorganisms6040117
Farida M dan Agustini D. 2019. Sistem Informasi Data Akademik Sekolah Pada MTS. Al Furqon Banjarmasin. Technologia Vol 10, No.2
Tomar RS, Jyoti A, Mishra RK, Vikas S, Shuchi K. 2014. In-silico Designing of SYBR Green Based Real-Time PCR Array for the Quantification of Salmonellae and Enterotoxigenic Escherichia coli in Water. European Academic Research Vol. I, Issue 12
Uddin M.B, Hossain SMB, Hasan M, Alam MN, Debnath M, Begum R, Roy S, Harun-Al-Rashid A, Chowdhury MSR, Rahman MM.. Multidrug Antimicrobial Resistance and Molecular Detection of mcr-1 Gene in Salmonella Species Isolated from Chicken. Animals 2021, 11, 206. https://doi.org/10.3390/ani11010206
Wahyuni FD, Saraswati H, Dewi KS. 2020. In Silico Analysis For cryl Gene Amplification From Bacillus thuringiensis. Bioedukasi: Jurnal Biologi dan Pembelajarannya. 18(1)8-14.
Ye, J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden T. 2012. Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics, 13(1).
Yu L, Tanwar DK, Penha EDS, Wolf YI, Koonin EV, Basu MK. 2019. Grammar of protein domain architechtures. Proceedings of the National Academy of Sciences DOI: 10.1073/pnas.181468411
Zelpina E dan Noor S. 2022. Non-Thypoid Salmonella Causes Food-borne Diseases Causing:Prevention and Control.
Zhai L, Liu H, Chen Q, Lu Z, Zhang C, Lv F, Bie X. 2018. Development of a real-time nucleic acid sequence–based amplification assay for the rapid detection of Salmonella spp. from food. Brazilian Journal of Microbiology, 50(1), pp.255-261.
Zhai, L, Yu, Q, Bie, X, Lu, Z, Lv, F, Zhang, C, Kong, X, Zhao, H, 2014. Development of a PCR test system for specific detection of Salmonella Paratyphi B in foods. FEMS Microbiology Letters, 355(1), pp.83-89.
Published
2022-11-15
Section
Original Articles
Copyright (c) 2022 Mahdalena Anwar Anwar, Siti Nurjanah Nurjanah, Winiati P. Rahayu
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
